Details

Biomolecular Information Processing


Biomolecular Information Processing

From Logic Systems to Smart Sensors and Actuators
1. Aufl.

von: Evgeny Katz

133,99 €

Verlag: Wiley-VCH
Format: PDF
Veröffentl.: 25.06.2012
ISBN/EAN: 9783527645503
Sprache: englisch
Anzahl Seiten: 378

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Beschreibungen

Edited by a renowned and much cited chemist, this book covers the whole span of molecular computers that are based on biomolecules. The contributions by all the major scientists in the field provide an excellent overview of the latest developments in this rapidly expanding area. <br> A must-have for all researchers working on this very hot topic. <br> Perfectly complements Molecular and Supramolecular Information Processing, also by Prof. Katz, and available as a two-volume set.<br>
Preface<br> <br> BIOMOLECULAR COMPUTING: FROM UNCONVENTIONAL COMPUTING TO "SMART" BIOSENSORS AND ACTUATORS-EDITORIAL INTRODUCTION<br> <br> PEPTIDE-BASED COMPUTATION: SWITCHES, GATES, AND SIMPLE ARITHMETIC<br> Introduction<br> Peptide-Based Replication Networks <br> Logic Gates within Ternary Networks Symmetry and Order Requirements for Constructing the Logic Gates <br> Taking the Steps toward More Complex Arithmetic <br> Experimental Logic Gates <br> Adaptive Networks <br> Peptide-Based Switches and Gates for Molecular Electronics <br> Summary and Conclusion <br> <br> BIOMOLECULAR ELECTRONICS AND PROTEIN-BASED OPTICAL COMPUTING <br> Introduction <br> Biomolecular and Semiconductor Electronics <br> Bacteriorhodopsin as a Photonic and Holographic Material for Bioelectronics <br> Fourier Transform Holographic Associative Processors <br> Three-Dimensional Optical Memories <br> Genetic Engineering of Bacteriorhodopsin for Device Applications <br> Future Directions <br> <br> BIOELECTRONIC DEVICES CONTROLLED BY ENZYME-BASED INFORMATION PROCESSING SYSTEMS <br> Introduction <br> Enzyme-Based Logic Systems Producing pH Changes as Output Signals <br> Interfacing of the Enzyme Logic Systems with Electrodes Modified with Signal-Responsive Polymers <br> Switchable Biofuel Cells Controlled by the Enzyme Logic Systems <br> Biomolecular Logic Systems Composed of Biocatalytic and Biorecognition Units and Their Integration with Biofuel Cells <br> Processing of Injury Biomarkers by Enzyme Logic Systems Associated with Switchable Electrodes <br> Summary and Outlook <br> <br> ENZYME LOGIC DIGITAL BIOSENSORS FOR BIOMEDICAL APPLICATIONS <br> Introduction <br> Enzyme-Based Logic Systems for Identification of Injury Conditions <br> Multiplexing of Injury Codes for the Parallel Operation of Enzyme Logic Gates <br> Scaling Up the Complexity of the Biocomputing Systems for Biomedical Applications -<br> Mimicking Biochemical Pathways <br> Application of Filter Systems for Improving Digitalization of the Output Signals Generated by Enzyme Logic Systems for Injury Analysis <br> Conclusions and Perspectives <br> <br> INFORMATION SECURITY APPLICATIONS BASED ON BIOMOLECULAR SYSTEMS <br> Introduction <br> Molecular and Bio-molecular Keypad Locks <br> Antibody Encryption and Steganography <br> Bio-barcode <br> Conclusion <br> <br> BIOCOMPUTING: EXPLORE ITS REALIZATION AND INTELLIGENT LOGIC DETECTION <br> Introduction <br> DNA Biocomputing<br> Aptamer Biocomputing <br> Enzyme Biocomputing <br> Conclusions and Perspectives <br> <br> SOME EXPERIMENTS AND MODELS IN MOLECULAR COMPUTING AND ROBOTICS <br> Introduction <br> From Gates to Programmable Automata <br> From Random Walker to Molecular Robotics <br> Conclusions<br> <br> BIOMOLECULAR FINITE AUTOMATA <br> Introduction <br> Biomolecular Finite Automata Biomolecular Finite Transducer <br> Applications in Developmental Biology <br> Outlook <br> <br> IN VIVO INFORMATION PROCESSING USING RNA INTERFERENCE <br> Introduction <br> RNA Interference-Based Logic <br> Building the Sensory Module <br> Outlook <br> <br> BIOMOLECULAR COMPUTING SYSTEMS <br> Introduction <br> DNA as a Tool for Molecular Programming <br> Birth of DNA Computing: Adleman's Experiment and Extensions <br> Computation Using DNA Tiles <br> Experimental Advances in Purely Hybridization-Based Computation <br> Experimental Advances in Enzyme-Based DNA Computing <br> Biochemical DNA Reaction Networks <br> Conclusion: Challenges in DNA-Based Biomolecular Computation <br> <br> ENUMERATION APPROACH TO THE ANALYSIS OF INTERACTING NUCLEIC ACID STRANDS <br> Introduction <br> Definitions and Notations for Set and Multiset <br> Chemical Equilibrium and Hybridization Reaction System <br> Symmetric Enumeration Method <br> Applying SEM to Nucleic Acid Strands Interaction <br> Conclusions <br> <br> RESTRICTION ENZYMES IN LANGUAGE GENERATION AND PLASMID COMPUTING <br> Introduction <br> Wet Splicing Systems <br> Dry Splicing Systems <br> Splicing Theory: Its Original Motivation and Its Extensive Unforeseen Developments <br> Computing with Plasmids <br> Fluid Memory <br> Examples of Aqueous Computations <br> Final Comments about Computing with Biomolecules <br> <br> DEVELOPMENT OF BACTERIA-BASED CELLULAR COMPUTING CIRCUITS FOR SENSING AND CONTROL IN BIOLOGICAL SYSTEMS <br> Introduction <br> Cellular Computing Circuits <br> Conclusion <br> <br> THE LOGIC OF DECISION MAKING IN ENVIRONMENTAL BACTERIA <br> Introduction <br> Building Models for Biological Networks <br> Formulation and Simulation of Regulatory Networks <br> Boolean Analysis of Regulatory Networks <br> Boolean Description of m-xylene Biodegradation by P. putida mt-2: the TOL logicome <br> Conclusion and Outlook <br> <br> QUALITATIVE AND QUANTITATIVE ASPECTS OF A MODEL FOR PROCESSES INSPIRED BY THE FUNCTIONING OF THE LIVING CELL <br> Introduction <br> Reactions <br> Reaction Systems <br> Examples <br> Reaction Systems with Measurements <br> Generalized Reactions <br> A Generic Quantitative Model <br> Approximations of Gene Expression Systems <br> Simulating Approximations by Reaction Systems <br> Discussion <br> <br> COMPUTATIONAL METHODS FOR QUANTITATIVE SUBMODEL COMPARISON<br> Introduction<br> Methods for Model Decomposition<br> Methods for Submodel Comparison<br> Case Study<br> Discussion<br> <br> CONCLUSIONS AND PERSPECTIVES <br> <br> Index <br>
Evgeny Katz received his Ph.D. in Chemistry from the Frumkin Institute of Electrochemistry (Moscow) in 1983. He was a senior researcher at the Institute of Photosynthesis (Pushchino), Russian Academy of Sciences (1983-1991), a Humboldt fellow at the Technische Universitat Munchen (Germany) (1992-1993), and a research associate professor at the Hebrew University of Jerusalem (1993-2006). Since 2006 he is Milton Kerker Chaired Professor at the Department of Chemistry and Biomolecular Science, Clarkson University, NY (USA). He has (co)authored over 360 papers in the areas of biocomputing, bioelectronics, biosensors and biofuel cells. Thomson Reuters included him in the list of the world?s top 100 chemists over the past 10 years as ranked by the impact of their published research. Professor Katz was also included in the list of top cited chemists prepared by the Royal Society of Chemistry with the worldwide rank 378 based on his Hirsch-index, which is currently 71.
Edited by a renowned and much cited chemist, this book covers the whole span of molecular computers that are based on biomolecules. The contributions by all the major scientists in the field provide an excellent overview of the latest developments in this rapidly expanding area.<br /> A must-have for all researchers working on this very hot topic.<br /> <br /> Perfectly complements Molecular and Supramolecular Information Processing, also by Professor Katz, and available as a two-volume set.<br /> <br /> <br /> From the contents:<br /> <ul> <li>Peptide Based Computation: Switches, Gates and Simple Arithmetic</li> <li>Enzyme-Logic Digital Biosensors for Biomedical Applications</li> <li>Information Security Applications Based on Biomolecular Systems</li> <li>Biocomputing: Explore its Realization and Intelligent Logic Detection</li> <li>Biologically Relevant Molecular Finite Automata</li> <li>In Vivo Information Processing Using RNA Interference</li> <li>Biomolecular Computing Systems</li> <li>Enumeration Approach to the Analysis of Interacting Nucleic Acid Strands</li> <li>The Logic of Decision-Making in Environmental Bacteria</li> <li>Qualitative and Quantitative Aspects of a Model for Processes Inspired by the Functioning of the Living Cell</li> <li>Computational Methods for Quantitative Submodel Comparison</li> <li>and more</li> </ul>

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