Third Edition
This edition first published 2015 © 2015 by John Wiley & Sons Inc
Registered office: John Wiley & Sons, Ltd, The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK
Editorial offices: 9600 Garsington Road, Oxford, OX4 2DQ, UK
The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK
111 River Street, Hoboken, NJ 07030-5774, USA
For details of our global editorial offices, for customer services and for information about how to apply for permission to reuse the copyright material in this book please see our website at www.wiley.com/wiley-blackwell.
The right of the author to be identified as the author of this work has been asserted in accordance with the UK Copyright, Designs and Patents Act 1988.
All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, except as permitted by the UK Copyright, Designs and Patents Act 1988, without the prior permission of the publisher.
Designations used by companies to distinguish their products are often claimed as trademarks. All brand names and product names used in this book are trade names, service marks, trademarks or registered trademarks of their respective owners. The publisher is not associated with any product or vendor mentioned in this book.
Limit of Liability/Disclaimer of Warranty: While the publisher and author(s) have used their best efforts in preparing this book, they make no representations or warranties with respect to the accuracy or completeness of the contents of this book and specifically disclaim any implied warranties of merchantability or fitness for a particular purpose. It is sold on the understanding that the publisher is not engaged in rendering professional services and neither the publisher nor the author shall be liable for damages arising herefrom. If professional advice or other expert assistance is required, the services of a competent professional should be sought.
Library of Congress Cataloging-in-Publication Data
Pevsner, Jonathan, 1961- , author.
Bioinformatics and functional genomics / Jonathan Pevsner.—Third edition.
p. ; cm.
Includes bibliographical references and indexes.
ISBN 978-1-118-58178-0 (cloth)
I. Title.
[DNLM: 1. Computational Biology—methods. 2. Genomics. 3. Genetic Techniques. 4. Proteomics. QU 26.5]
QH441.2
572.8′6–dc23
2015014465
A catalogue record for this book is available from the British Library.
Wiley also publishes its books in a variety of electronic formats. Some content that appears in print may not be available in electronic books.
The cover image is by Leonardo da Vinci, a study of a man in profile with studies of horse and riders (reproduced with kind permission of the Gallerie d’Accademia, Venice, Ms. 7r [236r], pen, black and red chalk). To the upper right a DNA molecule is shown (image courtesy of Wikimedia Commons) and a protein (human serum albumin, the most abundant protein in blood plasma, accession 1E7I, visualized with Cn3D software described in Chapter 13). Leonardo’s text reads: “From the eyebrow to the junction of the lip with the chin, and the angle of the jaw and the upper angle where the ear joins the temple will be a perfect square. And each side by itself is half the head. The hollow of the cheek bone occurs half way between the tip of the nose and the top of the jaw bone, which is the lower angle of the setting on of the ear, in the frame here represented. From the angle of the eye-socket to the ear is as far as the length of the ear, or the third of the face.” (Translation by Jean-Paul Richter, The Notebooks of Leonardo da Vinci, London, 1883.)
For three generations of family: to my parents
Aihud and Lucille; to my wife Barbara; to my daughters Kim,
Ava, and Lillian; and to my niece Madeline